Research

Sarah Alamdari, Nitya Thakkar, Rianne van den Berg, Alex X. Lu, Nicolo Fusi, Ava P. Amini, Kevin K. Yang (2023). Protein generation with evolutionary diffusion: sequence is all you need (preprint).

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Suchen Zheng, Nitya Thakkar, Hannah L. Harris, Megan Zhang, Susanna Liu, Mark Gerstein, Erez Lieberman Aiden, Jordan Rowley, William Stafford Noble, Gamze Gürsoy, Ritambhara Singh (2023). Predicting A/B compartments from histone modifications using deep learning. In ACM Conference on Bioinformatics, Computational Biology, and Health Informatics.

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Nitya Thakkar, Ritambhara Singh (2023). Using Graph Neural Networks to Model the Glioblastoma Free Energy Landscape (Honors Thesis).

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Nitya Thakkar, Robert Ford (2015). An example journal article. Journal of Source Themes, 1(1).

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